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Add GPU strong scaling measurement files

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paul
2024-03-09 18:49:03 +01:00
parent 1696d72a6f
commit 075d11b948
7 changed files with 12684 additions and 0 deletions
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experiments/eval/templates/strong-gpu.json
+263
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{
"Application": "Cells",
"CellsInSilico": {
"2D": false,
"adhesion": {
"matrix": [
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 450.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 450.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 50.0]
],
"polarityenabled": false
},
"centerofmass": {
"steps": 1
},
"cleaner": {
"killdistance": 0,
"steps": 100
},
"contactinhibition": {
"enabled": false
},
"division": {
"condition": [
"",
"",
"",
"",
"",
"",
"",
"",
"",
"( volume >= 0.9 * volume0 ) & ( rnd() <= 0.00001 ) & generation < 1"
],
"enabled": true,
"halveSignals": false
},
"dynamicecm": {
"alpha": 2.0,
"beta": 0.5,
"c": 4.0,
"deltat": 0.10000000149011612,
"ecmCellID": 0,
"enabled": true,
"eta": 0.25,
"k0": 0.10000000149011612,
"k1": 0.10000000149011612,
"lambda": 10.0,
"phi": 1.0,
"pushSteps": 10,
"pushWeight": 0.5,
"stepsPerMcs": 100
},
"ecmdegradation": {
"enabled": false
},
"energyfunctions": [
"Volume00",
"Surface01",
"Motility00",
"Adhesion01",
"DynamicECM00"
],
"liquid": 6,
"logcellproperties": {
"enabled": false
},
"orientation": {
"enabled": true,
"motility": "persistentRandomWalk",
"motilityamount": [
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0
],
"numRandomNumbers": 5,
"persistenceMagnitude": 0.0,
"persistentDecay": 0.8,
"recalculationtime": 200
},
"polarity": {
"enabled": false
},
"signaling": {
"constant": false,
"enabled": false
},
"surface": {
"default": {
"storage": "const",
"value": 400.0
},
"lambda": [
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
5.625,
5.625,
1.0
],
"sizechange": [
0.0,
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0.0,
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0.0,
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0.0
]
},
"temperature": 50.0,
"visitor": {
"checkerboard": "01",
"stepwidth": 10
},
"volume": {
"default": {
"storage": "const",
"value": 500.0
},
"lambda": [
0.0,
0.0,
0.0,
0.0,
0.0,
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7.5
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"sizechange": [
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0.0,
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0.0,
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]
}
},
"DefineFunctions": [
"r_angle()=360*rnd()",
"r_size()=400*rnd()"
],
"Filling": {
"cells": [
{
"box": [
[
0,
0,
0
],
[
384,
384,
384
]
],
"celltype": 0,
"component": 0,
"pattern": "const",
"seed": 0,
"shape": "cube",
"value": 0
},
{
"box": [
[117, 117, 177],
[267, 267, 267]
],
"celltype": 9,
"center": [192, 192, 192],
"component": 0,
"count": 5500,
"pattern": "voronoi",
"radius": 75,
"seed": 758960,
"shape": "sphere",
"value": 8
}
],
"initialoutput": false,
"randomseed": 758959
},
"Geometry": {
"blockcount": [
4,
4,
3
],
"blockdefault": "fill",
"blocksize": [
96,
96,
128
],
"blocktype": [
[
[
1
]
]
]
},
"Settings": {
"deltat": 1.0,
"deltax": 1.0,
"handleFPE": "signal",
"logger": {
"group": 0,
"steps": 100
},
"randomseed": 42,
"statusoutput": 1,
"timestepguard": 1,
"timesteps": 5,
"cuda": {
"subblocks": {
"blockDim": [8, 8, 8]
}
}
}
}