From 59d59355679d7802085b53256f0cc797447f1005 Mon Sep 17 00:00:00 2001 From: Paul Brinkmeier Date: Sat, 9 Mar 2024 23:34:48 +0100 Subject: [PATCH] Add more... --- experiments/eval/data/strong-cpu-timings.json | 17569 +--------------- experiments/eval/data/strong-cpu.tsv | 20 +- experiments/eval/data/strong-gpu-timings.json | 12313 +---------- experiments/eval/data/strong-gpu.tsv | 15 +- experiments/eval/scripts/timing.py | 33 +- experiments/eval/strong-cpu.json | 6 +- experiments/eval/templates/strong-cpu.json | 2 +- experiments/eval/templates/strong-gpu.json | 2 +- 8 files changed, 50 insertions(+), 29910 deletions(-) diff --git a/experiments/eval/data/strong-cpu-timings.json b/experiments/eval/data/strong-cpu-timings.json index d60b984..8fbd438 100644 --- a/experiments/eval/data/strong-cpu-timings.json +++ b/experiments/eval/data/strong-cpu-timings.json @@ -1,17568 +1 @@ -[ - { - "jobid": "9479365", - "means": { - "BC:cells": 0.8629468666666666, - "BC:dynamicecm": 58.94003339166667, 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b/experiments/eval/data/strong-gpu.tsv index e02fa72..bddda41 100644 --- a/experiments/eval/data/strong-gpu.tsv +++ b/experiments/eval/data/strong-gpu.tsv @@ -1,8 +1,9 @@ label nodes tasks mean_time std_time speedup speedup_std -1 1 1 157.5217688 0.5311809049610176 1.0 0.003372111099358209 -1 1 2 120.15237200000001 0.299200156243067 1.3110167213344732 0.004420894037456185 -1 1 4 75.69762635 0.5769735213369493 2.0809340582447473 0.007017140834839633 -2 2 8 52.110670325 0.940887445857671 3.022831366735062 0.010193323203255446 -4 4 16 28.215493675000005 0.5598524922936691 5.582811012077745 0.018825858979446598 -8 8 32 12.422501156249998 0.31940690526235005 12.680358554102268 0.04275957782413007 -16 16 64 7.70770194375 0.04068644910316383 20.43693048194875 0.06891560011499148 +1 1 1 316.56674059999995 1.3298279828832311 1.0 0.004200782370133899 +1 1 2 239.7297573 1.3705192585818793 1.3205150005797797 0.005547196133932895 +1 1 4 150.86725470000002 1.463195211854327 2.098313124537819 0.008814556780579045 +2 2 8 103.758313 1.3959932139830615 3.051001230137579 0.012816592178818781 +4 4 16 56.423368849999996 0.8293394846143929 5.610560784514376 0.02356874483015261 +8 8 32 24.168551143749998 0.5503559531334744 13.09829202078025 0.055023074199759194 +16 16 64 15.05716248125 0.04648043269670786 21.024329185144023 0.08831863138484462 +32 32 128 9.9111531140625 0.08848604506395903 31.940455056721632 0.1341749004963304 diff --git a/experiments/eval/scripts/timing.py b/experiments/eval/scripts/timing.py index 83342c1..0661805 100755 --- a/experiments/eval/scripts/timing.py +++ b/experiments/eval/scripts/timing.py @@ -44,12 +44,13 @@ def get_outdirs(jobid: str): return sorted(Path("/p/scratch/cellsinsilico/paul/nastja-out").glob(f"*{jobid}*")) -def load_array_mean_timings(jobid: str): - mts = [ - load_mean_timings(outdir_path) - for outdir_path - in get_outdirs(jobid) - ] +def load_array_mean_timings(jobid: str, excluded_array_indices): + mts = [] + for outdir_path in get_outdirs(jobid): + if any(str(outdir_path).endswith(str(i)) for i in excluded_array_indices): + print(f"Not loading timings for {outdir_path} because it was excluded.", file=sys.stderr) + continue + mts.append(load_mean_timings(outdir_path)) return pandas.DataFrame(list(mts), columns=mts[0].index) @@ -81,12 +82,28 @@ if __name__ == "__main__": for i, jobid in enumerate(args.jobid, 1): print(f"({i:2}/{len(args.jobid):2}) Loading accounting data for {jobid}", file=sys.stderr) accounting_data = get_accounting_data(jobid) - array_mean_timings = load_array_mean_timings(jobid) + + jobs = [] + excluded_array_indices = [] + for array_job in accounting_data["jobs"]: + # Get metadata related to array + array_main_job = array_job["array"]["job_id"] + array_index = array_job["array"]["task_id"] + # The last step is the actual job we want the data for + # The steps before set up cluster etc. + last_step = array_job["steps"][-1] + if last_step["state"] != "COMPLETED": + print(f"WARNING: {array_main_job}.{array_index} has state {last_step['state']}, excluding it from measurements", file=sys.stderr) + excluded_array_indices.append(array_index) + continue + jobs.append(last_step) + + array_mean_timings = load_array_mean_timings(jobid, excluded_array_indices) results.append({ "jobid": jobid, "means": array_mean_timings.mean().to_dict(), "stds": array_mean_timings.std().to_dict(), - "accounting": [array_job["steps"][-1] for array_job in accounting_data["jobs"]] + "accounting": jobs }) print(json.dumps(results, indent=2 if args.prettify else None)) diff --git a/experiments/eval/strong-cpu.json b/experiments/eval/strong-cpu.json index f65d922..6831b3f 100644 --- a/experiments/eval/strong-cpu.json +++ b/experiments/eval/strong-cpu.json @@ -13,19 +13,19 @@ "name": "strong-cpu-04-04-03", "nodes": 1, "tasks": 48, - "time": "00:30:00" + "time": "01:00:00" }, { "name": "strong-cpu-04-04-06", "nodes": 2, "tasks": 96, - "time": "00:30:00" + "time": "01:00:00" }, { "name": "strong-cpu-04-04-12", "nodes": 4, "tasks": 192, - "time": "00:10:00" + "time": "00:20:00" }, { "name": "strong-cpu-04-08-12", diff --git a/experiments/eval/templates/strong-cpu.json b/experiments/eval/templates/strong-cpu.json index 59c35bd..4166fe2 100644 --- a/experiments/eval/templates/strong-cpu.json +++ b/experiments/eval/templates/strong-cpu.json @@ -253,6 +253,6 @@ "randomseed": 42, "statusoutput": 1, "timestepguard": 1, - "timesteps": 5 + "timesteps": 10 } } diff --git a/experiments/eval/templates/strong-gpu.json b/experiments/eval/templates/strong-gpu.json index 7c8afa1..7cb8dc2 100644 --- a/experiments/eval/templates/strong-gpu.json +++ b/experiments/eval/templates/strong-gpu.json @@ -253,7 +253,7 @@ "randomseed": 42, "statusoutput": 1, "timestepguard": 1, - "timesteps": 5, + "timesteps": 10, "cuda": { "subblocks": { "blockDim": [8, 8, 8]