From 6c8c93589b65c6627badbd6a6b7bb73d4a3ec42b Mon Sep 17 00:00:00 2001
From: Paul Brinkmeier <hallo@pbrinkmeier.de>
Date: Wed, 17 Jan 2024 18:46:35 +0100
Subject: [PATCH] Update small.json for CUDA testing

---
 experiments/configs/small.json | 32 +++++++++++++++++++++++++++-----
 1 file changed, 27 insertions(+), 5 deletions(-)

diff --git a/experiments/configs/small.json b/experiments/configs/small.json
index 031df2e..30720d9 100644
--- a/experiments/configs/small.json
+++ b/experiments/configs/small.json
@@ -1,21 +1,40 @@
 {
   "#Testing": {
-    "description": "Cellular Potts Model with dynamic ECM"
+    "description": "Minimal config for debugging CUDA code"
   },
   "Application": "Cells",
   "Geometry": {
-    "blocksize": [15, 15, 15],
+    "blocksize": [5, 5, 5],
     "blockcount": [1, 1, 1]
   },
   "Settings": {
-    "timesteps": 100,
+    "timesteps": 1,
     "randomseed": 42
   },
   "Filling": {
     "cells": [
+      {
+        "_comment": "This is for the dynamic ECM",
+        "shape": "cube",
+        "box": [
+          [0, 0, 0],
+          [4, 2, 4]
+        ],
+        "value": 0,
+        "celltype": 0
+      },
+      {
+        "shape": "cube",
+        "box": [
+          [1, 1, 1],
+          [3, 3, 3]
+        ],
+        "celltype": 2
+      }
     ]
   },
   "CellsInSilico": {
+    "liquid": 1,
     "adhesion": {
       "matrix": [
         [0, 0, 0, 0],
@@ -53,12 +72,15 @@
       "killdistance": 100
     },
     "checkerboard": "00",
-    "energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00"],
+    "energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00", "DynamicECM00"],
     "centerofmass": {
       "steps": 10
     },
     "dynamicecm": {
       "enabled": true,
+      "ecmCellID": 0,
+      "stepsPerMcs": 1,
+      "pushSteps": 1,
       "deltat": 0.1,
       "eta": 0.5
     }
@@ -67,7 +89,7 @@
     "ParallelVTK_Displacement": {
       "writer": "ParallelVtkImage",
       "outputtype": "Float32",
-      "field": "dynamicecm_displacement",
+      "field": "dynamicecm",
       "steps": 1
     }
   },