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Add weak scaling config generation script

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paul
2024-03-11 00:14:03 +01:00
parent d41d8b564b
commit 79227e93d9
4 changed files with 389 additions and 12 deletions
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experiments/eval/templates/weak.json
+193
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{
"Application": "Cells",
"CellsInSilico": {
"2D": false,
"adhesion": {
"matrix": [
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 450.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
[0.0, 450.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 50.0]
],
"polarityenabled": false
},
"centerofmass": {
"steps": 1
},
"cleaner": {
"killdistance": 0,
"steps": 100
},
"contactinhibition": {
"enabled": false
},
"division": {
"condition": [
"",
"",
"",
"",
"",
"",
"",
"",
"",
"( volume >= 0.9 * volume0 ) & ( rnd() <= 0.00001 ) & generation < 1"
],
"enabled": true,
"halveSignals": false
},
"dynamicecm": {
"alpha": 2.0,
"beta": 0.5,
"c": 4.0,
"deltat": 0.1,
"ecmCellID": 0,
"enabled": true,
"eta": 0.25,
"k0": 0.1,
"k1": 0.1,
"lambda": 10.0,
"phi": 1.0,
"pushSteps": 10,
"pushWeight": 0.5,
"stepsPerMcs": 100
},
"ecmdegradation": {
"enabled": false
},
"energyfunctions": [
"Volume00",
"Surface01",
"Motility00",
"Adhesion01",
"DynamicECM00"
],
"liquid": 6,
"logcellproperties": {
"enabled": false
},
"orientation": {
"enabled": true,
"motility": "persistentRandomWalk",
"motilityamount": [
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0
],
"numRandomNumbers": 5,
"persistenceMagnitude": 0.0,
"persistentDecay": 0.8,
"recalculationtime": 200
},
"polarity": {
"enabled": false
},
"signaling": {
"constant": false,
"enabled": false
},
"surface": {
"default": {
"storage": "const",
"value": 400.0
},
"lambda": [
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
5.625,
5.625,
1.0
],
"sizechange": [
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
-0.05,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0
]
},
"temperature": 50.0,
"visitor": {
"checkerboard": "01",
"stepwidth": 10
},
"volume": {
"default": {
"storage": "const",
"value": 500.0
},
"lambda": [
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
7.5,
7.5,
7.5
],
"sizechange": [
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
-0.05,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0,
0.0
]
}
},
"DefineFunctions": [
"r_angle()=360*rnd()",
"r_size()=400*rnd()"
],
"Filling": {
"initialoutput": false,
"randomseed": 758959
},
"Settings": {
"randomseed": 42,
"statusoutput": 1,
"timesteps": 10
}
}