diff --git a/experiments/batch/cuda b/experiments/batch/cuda index 8dac19e..ec7a2d0 100644 --- a/experiments/batch/cuda +++ b/experiments/batch/cuda @@ -27,6 +27,6 @@ source "${SOURCE_DIR}/activate-nastja-modules" # However I'm leaving this here for documentation reasons export CUDA_VISIBLE_DEVICES=0 -srun "${SOURCE_DIR}/nastja/build-cuda/nastja" \ +srun --unbuffered "${SOURCE_DIR}/nastja/build-cuda/nastja" \ -c "${SOURCE_DIR}/ma/experiments/configs/genesis.json" \ -o "${OUTPUT_DIR}" diff --git a/experiments/batch/cuda-singleblock b/experiments/batch/cuda-singleblock index 5a235ee..44480b2 100644 --- a/experiments/batch/cuda-singleblock +++ b/experiments/batch/cuda-singleblock @@ -9,7 +9,6 @@ #SBATCH --nodes=1 # Number of MPI processes #SBATCH --ntasks=1 -#SBATCH --cpus-per-task=1 # For now, we are using a single GPU only #SBATCH --gres=gpu:1 #SBATCH --time=01:00:00 @@ -26,6 +25,6 @@ source "${SOURCE_DIR}/activate-nastja-modules" # However I'm leaving this here for documentation reasons export CUDA_VISIBLE_DEVICES=0 -srun "${SOURCE_DIR}/nastja/build-cuda/nastja" \ +srun --unbuffered "${SOURCE_DIR}/nastja/build-cuda/nastja" \ -c "${SOURCE_DIR}/ma/experiments/configs/genesis-singleblock.json" \ -o "${OUTPUT_DIR}" diff --git a/experiments/batch/nocuda b/experiments/batch/nocuda index dda8ef8..93fc970 100644 --- a/experiments/batch/nocuda +++ b/experiments/batch/nocuda @@ -21,6 +21,6 @@ OUTPUT_DIR=/p/scratch/cellsinsilico/paul/nastja-out/nocuda mkdir -p "${OUTPUT_DIR}" source "${SOURCE_DIR}/activate-nastja-modules" -srun "${SOURCE_DIR}/nastja/build-nocuda/nastja" \ +srun --unbuffered "${SOURCE_DIR}/nastja/build-nocuda/nastja" \ -c "${SOURCE_DIR}/ma/experiments/configs/genesis.json" \ -o "${OUTPUT_DIR}" diff --git a/experiments/batch/nocuda-singleblock b/experiments/batch/nocuda-singleblock index 3fd9976..3d8ba66 100644 --- a/experiments/batch/nocuda-singleblock +++ b/experiments/batch/nocuda-singleblock @@ -9,9 +9,7 @@ #SBATCH --nodes=1 # Number of MPI processes #SBATCH --ntasks=1 -#SBATCH --cpus-per-task=1 -# For now, we are using a single GPU only -#SBATCH --time=01:00:00 +#SBATCH --time=06:00:00 #SBATCH --output=logs/nocuda-singleblock-%j.log #SBATCH --error=logs/nocuda-singleblock-%j.log @@ -21,6 +19,6 @@ OUTPUT_DIR=/p/scratch/cellsinsilico/paul/nastja-out/nocuda-singleblock mkdir -p "${OUTPUT_DIR}" source "${SOURCE_DIR}/activate-nastja-modules" -srun "${SOURCE_DIR}/nastja/build-nocuda/nastja" \ +srun --unbuffered "${SOURCE_DIR}/nastja/build-nocuda/nastja" \ -c "${SOURCE_DIR}/ma/experiments/configs/genesis-singleblock.json" \ -o "${OUTPUT_DIR}"