Add new batch files

experiments/batch/build-cuda

@@ -8,8 +8,8 @@
 #SBATCH --ntasks-per-node=1
 #SBATCH --cpus-per-task=48
 #SBATCH --time=01:00:00
-#SBATCH --output=build-cuda-%j.out
-#SBATCH --error=build-cuda-%j.err
+#SBATCH --output=logs/build-cuda-%j.log
+#SBATCH --error=logs/build-cuda-%j.log
 
 SOURCE_DIR=/p/project/cellsinsilico/paulslustigebude
 

experiments/batch/build-nocuda

@@ -8,8 +8,8 @@
 #SBATCH --ntasks-per-node=1
 #SBATCH --cpus-per-task=48
 #SBATCH --time=01:00:00
-#SBATCH --output=build-nocuda-%j.out
-#SBATCH --error=build-nocuda-%j.err
+#SBATCH --output=logs/build-nocuda-%j.log
+#SBATCH --error=logs/build-nocuda-%j.log
 
 SOURCE_DIR=/p/project/cellsinsilico/paulslustigebude
 

experiments/batch/cuda

@@ -0,0 +1,32 @@
+#!/usr/bin/env bash
+
+#SBATCH --job-name=cuda
+# Forschergruppe Schug
+#SBATCH --account=hkf6
+# 48 Cores, 512GiB RAM, 4x NVIDIA A100 GPUs
+#SBATCH --partition=booster
+# Right now we're using a single node
+#SBATCH --nodes=1
+# Number of MPI processes
+# TODO: Change the config and set to this the maximum of 48
+#SBATCH --ntasks-per-node=16
+#SBATCH --cpus-per-task=1
+# For now, we are using a single GPU only
+#SBATCH --gres=gpu:1
+#SBATCH --time=01:00:00
+#SBATCH --output=logs/cuda-%j.log
+#SBATCH --error=logs/cuda-%j.log
+
+SOURCE_DIR=/p/project/cellsinsilico/paulslustigebude
+OUTPUT_DIR=/p/scratch/cellsinsilico/paul/nastja-out/cuda
+
+mkdir -p "${OUTPUT_DIR}"
+source "${SOURCE_DIR}/activate-nastja-modules"
+
+# This is actually the default behavior for a single task anyways
+# However I'm leaving this here for documentation reasons
+export CUDA_VISIBLE_DEVICES=0
+
+srun "${SOURCE_DIR}/nastja/build-cuda/nastja" \
+  -c "${SOURCE_DIR}/ma/experiments/configs/genesis.json" \
+  -o "${OUTPUT_DIR}"

experiments/batch/nocuda

@@ -12,8 +12,8 @@
 #SBATCH --ntasks-per-node=16
 #SBATCH --cpus-per-task=1
 #SBATCH --time=01:00:00
-#SBATCH --output=nocuda-%j.out
-#SBATCH --error=nocuda-%j.err
+#SBATCH --output=logs/nocuda-%j.log
+#SBATCH --error=logs/nocuda-%j.log
 
 SOURCE_DIR=/p/project/cellsinsilico/paulslustigebude
 OUTPUT_DIR=/p/scratch/cellsinsilico/paul/nastja-out/nocuda

experiments/batch/nocuda-noecm

@@ -0,0 +1,26 @@
+#!/usr/bin/env bash
+
+#SBATCH --job-name=nocuda-noecm
+# Forschergruppe Schug
+#SBATCH --account=hkf6
+# 48 Cores, 512GiB RAM, 4x NVIDIA A100 GPUs
+#SBATCH --partition=booster
+# Right now we're using a single node
+#SBATCH --nodes=1
+# Number of MPI processes
+# TODO: Change the config and set to this the maximum of 48
+#SBATCH --ntasks-per-node=16
+#SBATCH --cpus-per-task=1
+#SBATCH --time=01:00:00
+#SBATCH --output=logs/nocuda-noecm-%j.log
+#SBATCH --error=logs/nocuda-noecm-%j.log
+
+SOURCE_DIR=/p/project/cellsinsilico/paulslustigebude
+OUTPUT_DIR=/p/scratch/cellsinsilico/paul/nastja-out/nocuda-noecm
+
+mkdir -p "${OUTPUT_DIR}"
+source "${SOURCE_DIR}/activate-nastja-modules"
+
+srun "${SOURCE_DIR}/nastja/build-nocuda/nastja" \
+  -c "${SOURCE_DIR}/ma/experiments/configs/genesis-noecm.json" \
+  -o "${OUTPUT_DIR}"