{ "Comments": [ "Celltype Usage", "0 Dynamic ECM", "1-5 Not Used", "6 Liquid ", "7 Apoptotic cell Type ", "8 Basic Non Dividing Cell type (surrounding)", "9 Cancer" ], "Application": "Cells", "CellsInSilico": { "ecmdegradation": { "enabled": "false", "steps": 99999, "stochastic": "true", "probability": 0.5 }, "energyfunctions": [ "Volume00", "Surface01", "Motility00", "Adhesion01", "DynamicECM00" ], "liquid": 6, "volume": { "default": { "storage": "const", "value": 500 }, "lambda": [ 0, 0, 0, 0, 0, 0, 0, 7.5, 7.5, 7.5 ], "sizechange": [ 0, 0, 0, 0, 0, 0, 0, -0.05, 0, 0, 0, 0, 0, 0, 0 ] }, "surface": { "default": { "storage": "const", "value": 400 }, "lambda": [ 0, 0, 0, 0, 0, 0, 0, 5.625, 5.625, 1 ], "sizechange": [ 0, 0, 0, 0, 0, 0, 0, -0.05, 0, 0, 0, 0, 0, 0, 0, 0 ] }, "adhesion": { "matrix": [ [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 450 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ], [ 0, 450, 0, 0, 0, 0, 0, 0, 0, 50 ] ] }, "temperature": 50, "division": { "enabled": "true", "condition": [ "", "", "", "", "", "", "", "", "", "( volume >= 0.9 * volume0 ) & ( rnd() <= 0.00001 ) & generation < 1" ] }, "centerofmass": { "steps": 1 }, "signaling": { "enabled": false }, "orientation": { "enabled": true, "motility": "persistentRandomWalk", "persistenceMagnitude": 0.0, "recalculationtime": 200, "motilityamount": [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ] }, "visitor": { "stepwidth": 10, "checkerboard": "01" }, "cleaner": { "killDistance": 20 }, "dynamicecm": { "enabled": true, "stepsPerMcs": 100, "pushSteps": 10, "pushWeight": 2, "ecmCellID": 0, "deltat": 0.1, "eta": 0.25, "k0": 0.1, "k1": 0.1, "c": 4, "alpha": 2, "d": 0.3, "phi": 1 } }, "Geometry": { "blockcount": [ 2, 4, 4 ], "blocksize": [ 200, 100, 100 ] }, "Settings": { "randomseed": 0, "timesteps": 5000, "statusoutput": 1 }, "WriteActions": ["ParallelVTK_Cells", "ParallelVTK_Displacement"], "Writers": { "CellInfo": { "field": "", "groupsize": 0, "steps": 1, "writer": "CellInfo" }, "ParallelVTK_Cells": { "field": "cells", "outputtype": "UInt32", "printhints": false, "steps": 100, "writer": "ParallelVtkImage" }, "ParallelVTK_Displacement": { "writer": "ParallelVtkImage", "outputtype": "Float32", "field": "dynamicecm", "components": [ 0, 1, 2 ], "steps": 100 } }, "Include": "measurements/strong/config_filling_1.json" }