{ "Comments": ["Celltype Usage", "0 Not Used", "1-5 Solids for blood vessels / ECM", "6 Liquid ", "7 Apoptotic cell Type ", "8 Basic Non Dividing Cell type (surrounding)", "9 Cancer"], "Application": "Cells", "CellsInSilico": { "ecmdegradation": { "enabled": "false", "steps": 99999, "stochastic": "true", "probability": 0.5 }, "energyfunctions": ["Volume00", "Surface01", "Motility00", "Adhesion01", "DynamicECM00"], "liquid": 6, "volume": { "default": { "storage": "const", "value": 500 }, "lambda": [0, 0, 0, 0, 0, 0, 0, 7.5, 7.5, 7.5], "sizechange": [0, 0, 0, 0, 0, 0, 0, -0.05, 0, 0, 0, 0, 0, 0, 0] }, "surface": { "default": { "storage": "const", "value": 400 }, "lambda": [0, 0, 0, 0, 0, 0, 0, 5.625, 5.625, 1], "sizechange": [0, 0, 0, 0, 0, 0, 0, -0.05, 0, 0, 0, 0, 0, 0, 0, 0] }, "adhesion": { "matrix": [ [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 450], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 450, 0, 0, 0, 0, 0, 0, 0, 50] ] }, "temperature": 50, "division": { "enabled": "true", "condition": ["", "", "", "", "", "", "", "", "", "( volume >= 0.9 * volume0 ) & ( rnd() <= 0.00001 ) & generation < 1"] }, "centerofmass": { "steps": 1 }, "signaling": { "enabled": false }, "orientation": { "enabled": true, "motility": "persistentRandomWalk", "persistenceMagnitude": 0.0, "recalculationtime": 200, "motilityamount": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0] }, "visitor": { "stepwidth": 10, "checkerboard": "01" }, "cleaner": { "killDistance": 20 }, "dynamicecm": { "enabled": true, "stepsPerMcs": 100, "pushSteps": 10, "pushWeight": 2, "ecmCellID": 0, "deltat": 0.1, "eta": 0.25, "k0": 0.1, "k1": 0.1, "c": 4, "alpha": 2, "d": 0.3, "phi": 1 } }, "Geometry": { "blockcount": [8, 8, 6], "blocksize": [50, 50, 67] }, "Settings": { "randomseed": 0, "timesteps": 100 }, "WriteActions": ["CellInfo"], "Writers": { "CellInfo": { "field": "", "groupsize": 0, "steps": 1, "writer": "CellInfo" }, "ParallelVTK_Cells": { "field": "cells", "outputtype": "UInt32", "printhints": false, "steps": 1, "writer": "ParallelVtkImage" }, "ParallelVTK_Displacement": { "writer": "ParallelVtkImage", "outputtype": "Float32", "field": "dynamicecm", "components": [0, 1, 2], "steps": 1 } }, "Include": "config_filling_1.json" }