101 lines
3.1 KiB
JSON
101 lines
3.1 KiB
JSON
{
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"Comments": ["Celltype Usage", "0 Dynamic ECM", "1-5 Not Used", "6 Liquid ", "7 Apoptotic cell Type ", "8 Basic Non Dividing Cell type (surrounding)", "9 Cancer"],
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"Application": "Cells",
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"CellsInSilico": {
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"ecmdegradation": {
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"enabled": "false",
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"steps": 99999,
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"stochastic": "true",
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"probability": 0.5
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},
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"energyfunctions": ["Volume00", "Surface01", "Motility00", "Adhesion01", "DynamicECM00"],
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"liquid": 6,
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"volume": {
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"default": {
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"storage": "const",
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"value": 500
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},
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"lambda": [0, 0, 0, 0, 0, 0, 0, 7.5, 7.5, 7.5],
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"sizechange": [0, 0, 0, 0, 0, 0, 0, -0.05, 0, 0, 0, 0, 0, 0, 0]
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},
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"surface": {
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"default": {
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"storage": "const",
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"value": 400
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},
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"lambda": [0, 0, 0, 0, 0, 0, 0, 5.625, 5.625, 1],
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"sizechange": [0, 0, 0, 0, 0, 0, 0, -0.05, 0, 0, 0, 0, 0, 0, 0, 0]
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},
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"adhesion": {
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"matrix": [
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 450],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 450, 0, 0, 0, 0, 0, 0, 0, 50]
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]
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},
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"temperature": 50,
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"division": {
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"enabled": "true",
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"condition": ["", "", "", "", "", "", "", "", "", "( volume >= 0.9 * volume0 ) & ( rnd() <= 0.00001 ) & generation < 1"]
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},
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"centerofmass": {
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"steps": 1
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},
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"signaling": {
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"enabled": false
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},
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"orientation": {
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"enabled": true,
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"motility": "persistentRandomWalk",
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"persistenceMagnitude": 0.0,
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"recalculationtime": 200,
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"motilityamount": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
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},
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"visitor": {
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"stepwidth": 10,
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"checkerboard": "01"
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},
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"cleaner": {
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"killDistance": 20
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},
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"dynamicecm": {
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"enabled": true,
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"stepsPerMcs": 100,
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"pushSteps": 10,
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"pushWeight": 2,
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"ecmCellID": 0,
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"deltat": 0.1,
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"eta": 0.25,
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"k0": 0.1,
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"k1": 0.1,
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"c": 4,
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"alpha": 2,
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"d": 0.3,
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"phi": 1
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}
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},
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"Geometry": {
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"blockcount": null,
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"blocksize": null
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},
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"Settings": {
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"randomseed": 0,
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"timesteps": 20,
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"statusoutput": 1
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},
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"DefineFunctions": [
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"r_angle()=360*rnd()",
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"r_size()=400*rnd()"
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],
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"Filling": {
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"cells": null
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}
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}
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