264 lines
4.7 KiB
JSON
264 lines
4.7 KiB
JSON
{
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"Application": "Cells",
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"CellsInSilico": {
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"2D": false,
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"adhesion": {
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"matrix": [
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 450.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
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[0.0, 450.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 50.0]
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],
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"polarityenabled": false
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},
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"centerofmass": {
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"steps": 1
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},
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"cleaner": {
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"killdistance": 0,
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"steps": 100
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},
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"contactinhibition": {
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"enabled": false
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},
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"division": {
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"condition": [
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"",
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"",
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"",
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"",
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"",
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"",
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"",
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"",
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"",
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"( volume >= 0.9 * volume0 ) & ( rnd() <= 0.00001 ) & generation < 1"
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],
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"enabled": true,
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"halveSignals": false
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},
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"dynamicecm": {
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"alpha": 2.0,
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"beta": 0.5,
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"c": 4.0,
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"deltat": 0.10000000149011612,
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"ecmCellID": 0,
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"enabled": true,
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"eta": 0.25,
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"k0": 0.10000000149011612,
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"k1": 0.10000000149011612,
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"lambda": 10.0,
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"phi": 1.0,
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"pushSteps": 10,
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"pushWeight": 0.5,
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"stepsPerMcs": 100
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},
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"ecmdegradation": {
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"enabled": false
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},
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"energyfunctions": [
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"Volume00",
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"Surface01",
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"Motility00",
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"Adhesion01",
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"DynamicECM00"
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],
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"liquid": 6,
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"logcellproperties": {
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"enabled": false
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},
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"orientation": {
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"enabled": true,
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"motility": "persistentRandomWalk",
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"motilityamount": [
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0.0,
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0.0,
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0.0,
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0.0,
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0.0
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],
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"numRandomNumbers": 5,
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"persistenceMagnitude": 0.0,
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"persistentDecay": 0.8,
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"recalculationtime": 200
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},
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"polarity": {
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"enabled": false
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},
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"signaling": {
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"constant": false,
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"enabled": false
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},
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"surface": {
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"default": {
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"storage": "const",
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"value": 400.0
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},
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"lambda": [
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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5.625,
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5.625,
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1.0
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],
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"sizechange": [
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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0.0
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]
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},
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"temperature": 50.0,
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"visitor": {
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"checkerboard": "01",
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"stepwidth": 10
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},
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"volume": {
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"default": {
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"storage": "const",
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"value": 500.0
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},
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"lambda": [
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0.0,
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0.0,
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0.0,
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0.0,
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0.0,
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7.5,
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7.5,
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7.5
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],
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"sizechange": [
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0.0,
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0.0,
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0.0
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]
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}
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},
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"DefineFunctions": [
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"r_angle()=360*rnd()",
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"r_size()=400*rnd()"
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],
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"Filling": {
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"cells": [
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{
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"box": [
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[
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0,
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0,
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0
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],
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[
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384,
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384,
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384
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]
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],
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"celltype": 0,
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"component": 0,
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"pattern": "const",
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"seed": 0,
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"shape": "cube",
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"value": 0
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},
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{
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"box": [
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[117, 117, 177],
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[267, 267, 267]
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],
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"celltype": 9,
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"center": [192, 192, 192],
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"component": 0,
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"count": 5500,
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"pattern": "voronoi",
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"radius": 75,
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"seed": 758960,
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"shape": "sphere",
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"value": 8
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}
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],
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"initialoutput": false,
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"randomseed": 758959
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},
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"Geometry": {
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"blockcount": [
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4,
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4,
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3
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],
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"blockdefault": "fill",
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"blocksize": [
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96,
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96,
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128
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],
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"blocktype": [
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[
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[
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1
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]
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]
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]
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},
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"Settings": {
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"deltat": 1.0,
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"deltax": 1.0,
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"handleFPE": "signal",
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"logger": {
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"group": 0,
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"steps": 100
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},
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"randomseed": 42,
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"statusoutput": 1,
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"timestepguard": 1,
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"timesteps": 10,
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"cuda": {
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"subblocks": {
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"blockDim": [8, 8, 8]
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}
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}
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}
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}
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