97 lines
1.8 KiB
JSON
97 lines
1.8 KiB
JSON
{
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"#Testing": {
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"description": "Cellular Potts Model with dynamic ECM"
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},
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"Application": "Cells",
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"Geometry": {
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"blocksize": [80, 40, 20],
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"blockcount": [1, 2, 4]
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},
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"Settings": {
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"timesteps": 100,
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"randomseed": 42
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},
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"Filling": {
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"cells": [
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{
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"shape": "cube",
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"box": [
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[21, 35, 10],
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[25, 39, 15]
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],
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"celltype": 0
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},
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{
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"shape": "cube",
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"box": [
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[15, 15, 14],
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[22, 22, 20]
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],
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"celltype": 0
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}
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]
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},
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"CellsInSilico": {
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"adhesion": {
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"matrix": [
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[0, 0, 0, 0],
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[0, 20, 5, 5],
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[0, 5, 10, 5],
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[0, 5, 5, 5]
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]
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},
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"potential": {
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"direction": [1, 1, 0],
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"coupling": [0, 150, 100, 50]
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},
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"temperature": 15,
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"volume": {
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"default": {
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"storage": "const",
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"value": 300
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},
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"lambda": {
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"storage": "const",
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"value": 10
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}
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},
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"surface": {
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"default": {
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"storage": "const",
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"value": 400
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},
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"lambda": {
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"storage": "const",
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"value": 10
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}
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},
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"cleaner": {
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"killdistance": 100
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},
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"checkerboard": "00",
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"energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00"],
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"centerofmass": {
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"steps": 10
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},
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"dynamicecm": {
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"enabled": true,
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"deltat": 0.1
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}
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},
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"Writers": {
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"ParallelVTK_Cells": {
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"writer": "ParallelVtkImage",
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"outputtype": "UInt32",
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"field": "cells",
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"steps": 5
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},
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"ParallelVTK_Displacement": {
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"writer": "ParallelVtkImage",
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"outputtype": "Float32",
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"field": "dynamicecm_displacement",
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"steps": 1
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}
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},
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"WriteActions": ["ParallelVTK_Cells", "ParallelVTK_Displacement"]
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}
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