Update small.json for CUDA testing
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				| @ -1,21 +1,40 @@ | |||||||
| { | { | ||||||
|   "#Testing": { |   "#Testing": { | ||||||
|     "description": "Cellular Potts Model with dynamic ECM" |     "description": "Minimal config for debugging CUDA code" | ||||||
|   }, |   }, | ||||||
|   "Application": "Cells", |   "Application": "Cells", | ||||||
|   "Geometry": { |   "Geometry": { | ||||||
|     "blocksize": [15, 15, 15], |     "blocksize": [5, 5, 5], | ||||||
|     "blockcount": [1, 1, 1] |     "blockcount": [1, 1, 1] | ||||||
|   }, |   }, | ||||||
|   "Settings": { |   "Settings": { | ||||||
|     "timesteps": 100, |     "timesteps": 1, | ||||||
|     "randomseed": 42 |     "randomseed": 42 | ||||||
|   }, |   }, | ||||||
|   "Filling": { |   "Filling": { | ||||||
|     "cells": [ |     "cells": [ | ||||||
|  |       { | ||||||
|  |         "_comment": "This is for the dynamic ECM", | ||||||
|  |         "shape": "cube", | ||||||
|  |         "box": [ | ||||||
|  |           [0, 0, 0], | ||||||
|  |           [4, 2, 4] | ||||||
|  |         ], | ||||||
|  |         "value": 0, | ||||||
|  |         "celltype": 0 | ||||||
|  |       }, | ||||||
|  |       { | ||||||
|  |         "shape": "cube", | ||||||
|  |         "box": [ | ||||||
|  |           [1, 1, 1], | ||||||
|  |           [3, 3, 3] | ||||||
|  |         ], | ||||||
|  |         "celltype": 2 | ||||||
|  |       } | ||||||
|     ] |     ] | ||||||
|   }, |   }, | ||||||
|   "CellsInSilico": { |   "CellsInSilico": { | ||||||
|  |     "liquid": 1, | ||||||
|     "adhesion": { |     "adhesion": { | ||||||
|       "matrix": [ |       "matrix": [ | ||||||
|         [0, 0, 0, 0], |         [0, 0, 0, 0], | ||||||
| @ -53,12 +72,15 @@ | |||||||
|       "killdistance": 100 |       "killdistance": 100 | ||||||
|     }, |     }, | ||||||
|     "checkerboard": "00", |     "checkerboard": "00", | ||||||
|     "energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00"], |     "energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00", "DynamicECM00"], | ||||||
|     "centerofmass": { |     "centerofmass": { | ||||||
|       "steps": 10 |       "steps": 10 | ||||||
|     }, |     }, | ||||||
|     "dynamicecm": { |     "dynamicecm": { | ||||||
|       "enabled": true, |       "enabled": true, | ||||||
|  |       "ecmCellID": 0, | ||||||
|  |       "stepsPerMcs": 1, | ||||||
|  |       "pushSteps": 1, | ||||||
|       "deltat": 0.1, |       "deltat": 0.1, | ||||||
|       "eta": 0.5 |       "eta": 0.5 | ||||||
|     } |     } | ||||||
| @ -67,7 +89,7 @@ | |||||||
|     "ParallelVTK_Displacement": { |     "ParallelVTK_Displacement": { | ||||||
|       "writer": "ParallelVtkImage", |       "writer": "ParallelVtkImage", | ||||||
|       "outputtype": "Float32", |       "outputtype": "Float32", | ||||||
|       "field": "dynamicecm_displacement", |       "field": "dynamicecm", | ||||||
|       "steps": 1 |       "steps": 1 | ||||||
|     } |     } | ||||||
|   }, |   }, | ||||||
|  | |||||||
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