Update small.json for CUDA testing

This commit is contained in:
Paul Brinkmeier 2024-01-17 18:46:35 +01:00
parent 744512e4b5
commit 6c8c93589b

View File

@ -1,21 +1,40 @@
{ {
"#Testing": { "#Testing": {
"description": "Cellular Potts Model with dynamic ECM" "description": "Minimal config for debugging CUDA code"
}, },
"Application": "Cells", "Application": "Cells",
"Geometry": { "Geometry": {
"blocksize": [15, 15, 15], "blocksize": [5, 5, 5],
"blockcount": [1, 1, 1] "blockcount": [1, 1, 1]
}, },
"Settings": { "Settings": {
"timesteps": 100, "timesteps": 1,
"randomseed": 42 "randomseed": 42
}, },
"Filling": { "Filling": {
"cells": [ "cells": [
{
"_comment": "This is for the dynamic ECM",
"shape": "cube",
"box": [
[0, 0, 0],
[4, 2, 4]
],
"value": 0,
"celltype": 0
},
{
"shape": "cube",
"box": [
[1, 1, 1],
[3, 3, 3]
],
"celltype": 2
}
] ]
}, },
"CellsInSilico": { "CellsInSilico": {
"liquid": 1,
"adhesion": { "adhesion": {
"matrix": [ "matrix": [
[0, 0, 0, 0], [0, 0, 0, 0],
@ -53,12 +72,15 @@
"killdistance": 100 "killdistance": 100
}, },
"checkerboard": "00", "checkerboard": "00",
"energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00"], "energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00", "DynamicECM00"],
"centerofmass": { "centerofmass": {
"steps": 10 "steps": 10
}, },
"dynamicecm": { "dynamicecm": {
"enabled": true, "enabled": true,
"ecmCellID": 0,
"stepsPerMcs": 1,
"pushSteps": 1,
"deltat": 0.1, "deltat": 0.1,
"eta": 0.5 "eta": 0.5
} }
@ -67,7 +89,7 @@
"ParallelVTK_Displacement": { "ParallelVTK_Displacement": {
"writer": "ParallelVtkImage", "writer": "ParallelVtkImage",
"outputtype": "Float32", "outputtype": "Float32",
"field": "dynamicecm_displacement", "field": "dynamicecm",
"steps": 1 "steps": 1
} }
}, },