Update small.json for CUDA testing
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				| @ -1,21 +1,40 @@ | ||||
| { | ||||
|   "#Testing": { | ||||
|     "description": "Cellular Potts Model with dynamic ECM" | ||||
|     "description": "Minimal config for debugging CUDA code" | ||||
|   }, | ||||
|   "Application": "Cells", | ||||
|   "Geometry": { | ||||
|     "blocksize": [15, 15, 15], | ||||
|     "blocksize": [5, 5, 5], | ||||
|     "blockcount": [1, 1, 1] | ||||
|   }, | ||||
|   "Settings": { | ||||
|     "timesteps": 100, | ||||
|     "timesteps": 1, | ||||
|     "randomseed": 42 | ||||
|   }, | ||||
|   "Filling": { | ||||
|     "cells": [ | ||||
|       { | ||||
|         "_comment": "This is for the dynamic ECM", | ||||
|         "shape": "cube", | ||||
|         "box": [ | ||||
|           [0, 0, 0], | ||||
|           [4, 2, 4] | ||||
|         ], | ||||
|         "value": 0, | ||||
|         "celltype": 0 | ||||
|       }, | ||||
|       { | ||||
|         "shape": "cube", | ||||
|         "box": [ | ||||
|           [1, 1, 1], | ||||
|           [3, 3, 3] | ||||
|         ], | ||||
|         "celltype": 2 | ||||
|       } | ||||
|     ] | ||||
|   }, | ||||
|   "CellsInSilico": { | ||||
|     "liquid": 1, | ||||
|     "adhesion": { | ||||
|       "matrix": [ | ||||
|         [0, 0, 0, 0], | ||||
| @ -53,12 +72,15 @@ | ||||
|       "killdistance": 100 | ||||
|     }, | ||||
|     "checkerboard": "00", | ||||
|     "energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00"], | ||||
|     "energyfunctions": ["Volume00", "Surface00", "Adhesion00", "Potential00", "DynamicECM00"], | ||||
|     "centerofmass": { | ||||
|       "steps": 10 | ||||
|     }, | ||||
|     "dynamicecm": { | ||||
|       "enabled": true, | ||||
|       "ecmCellID": 0, | ||||
|       "stepsPerMcs": 1, | ||||
|       "pushSteps": 1, | ||||
|       "deltat": 0.1, | ||||
|       "eta": 0.5 | ||||
|     } | ||||
| @ -67,7 +89,7 @@ | ||||
|     "ParallelVTK_Displacement": { | ||||
|       "writer": "ParallelVtkImage", | ||||
|       "outputtype": "Float32", | ||||
|       "field": "dynamicecm_displacement", | ||||
|       "field": "dynamicecm", | ||||
|       "steps": 1 | ||||
|     } | ||||
|   }, | ||||
|  | ||||
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